Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2935725..2935928 | Replicon | chromosome |
| Accession | NZ_CP065939 | ||
| Organism | Enterobacter hormaechei strain MSB1_8J | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2935732..2935835 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2935725..2935928 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JDC97_RS14375 | 2931114..2931794 | + | 681 | WP_022651073.1 | YqaJ viral recombinase family protein | - |
| JDC97_RS14380 | 2931791..2932219 | + | 429 | WP_022651072.1 | hypothetical protein | - |
| JDC97_RS14385 | 2932216..2932368 | + | 153 | WP_022651071.1 | DUF1317 family protein | - |
| JDC97_RS14390 | 2932365..2932916 | + | 552 | WP_022651070.1 | phage N-6-adenine-methyltransferase | - |
| JDC97_RS14395 | 2932913..2933131 | + | 219 | WP_032621601.1 | hypothetical protein | - |
| JDC97_RS14400 | 2933450..2933668 | + | 219 | WP_058656544.1 | TraR/DksA family transcriptional regulator | - |
| JDC97_RS14405 | 2933668..2933907 | + | 240 | WP_058656543.1 | DUF4222 domain-containing protein | - |
| JDC97_RS14410 | 2933913..2934125 | - | 213 | WP_045617122.1 | hypothetical protein | - |
| JDC97_RS14415 | 2934328..2934600 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| JDC97_RS14420 | 2934569..2935654 | + | 1086 | WP_058691373.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2935725..2935928 | + | 204 | - | - | Antitoxin |
| - | 2935732..2935835 | - | 104 | - | - | Toxin |
| JDC97_RS14425 | 2935977..2936315 | - | 339 | WP_003859787.1 | YebY family protein | - |
| JDC97_RS14430 | 2936332..2937201 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| JDC97_RS14435 | 2937203..2937574 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| JDC97_RS14440 | 2937712..2937942 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| JDC97_RS14445 | 2938054..2938704 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| JDC97_RS14450 | 2938729..2939391 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2881027..2956673 | 75646 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T183632 NZ_CP065939:c2935835-2935732 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT183632 NZ_CP065939:2935725-2935928 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
