Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2490143..2490314 | Replicon | chromosome |
| Accession | NZ_CP065700 | ||
| Organism | Atlantibacter hermannii strain FDAARGOS_888 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2490150..2490254 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2490143..2490314 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G45_RS11845 | 2486903..2488339 | + | 1437 | WP_002462875.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6G45_RS11850 | 2488454..2488693 | + | 240 | WP_002462877.1 | YebV family protein | - |
| I6G45_RS11855 | 2488801..2488992 | + | 192 | WP_002462879.1 | YebW family protein | - |
| I6G45_RS11860 | 2488993..2489637 | - | 645 | WP_002462881.1 | metallophosphoesterase | - |
| - | 2490143..2490314 | + | 172 | - | - | Antitoxin |
| - | 2490150..2490254 | - | 105 | - | - | Toxin |
| I6G45_RS11865 | 2490405..2490743 | - | 339 | WP_040459559.1 | YebY family protein | - |
| I6G45_RS11870 | 2490768..2491643 | - | 876 | WP_002462885.1 | copper homeostasis membrane protein CopD | - |
| I6G45_RS11875 | 2491645..2492019 | - | 375 | WP_040459491.1 | CopC domain-containing protein YobA | - |
| I6G45_RS11880 | 2492170..2492400 | + | 231 | WP_002462888.1 | DNA polymerase III subunit theta | - |
| I6G45_RS11885 | 2492446..2493114 | + | 669 | WP_002462890.1 | exodeoxyribonuclease X | - |
| I6G45_RS11890 | 2493111..2495171 | - | 2061 | WP_002462892.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T183241 NZ_CP065700:c2490254-2490150 [Atlantibacter hermannii]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 172 bp
>AT183241 NZ_CP065700:2490143-2490314 [Atlantibacter hermannii]
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
