Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 423869..424003 | Replicon | chromosome |
| Accession | NZ_CP065613 | ||
| Organism | Escherichia coli strain FDAARGOS_944 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 423907..424003 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 423869..424000 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H01_RS02030 | 421026..422465 | + | 1440 | WP_038339011.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6H01_RS02035 | 422583..422819 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6H01_RS02040 | 422924..423115 | + | 192 | WP_001338167.1 | YebW family protein | - |
| I6H01_RS02045 | 423116..423772 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 423869..424000 | + | 132 | - | - | Antitoxin |
| - | 423907..424003 | - | 97 | - | - | Toxin |
| I6H01_RS02050 | 424055..424752 | + | 698 | Protein_406 | IS1-like element IS1A family transposase | - |
| I6H01_RS02055 | 424952..426097 | - | 1146 | WP_072035508.1 | copper homeostasis membrane protein CopD | - |
| I6H01_RS02060 | 426101..426475 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6H01_RS02065 | 426614..426844 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6H01_RS02070 | 426946..427602 | + | 657 | WP_038340264.1 | carbon-nitrogen hydrolase family protein | - |
| I6H01_RS02075 | 427626..428288 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 424249..424752 | 503 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T183006 NZ_CP065613:c424003-423907 [Escherichia coli]
CACCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATC
GTGTTCGGTCTCTTTTT
CACCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATC
GTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 132 bp
>AT183006 NZ_CP065613:423869-424000 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAG
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAG
