Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5160011..5160156 | Replicon | chromosome |
| Accession | NZ_CP065441 | ||
| Organism | Klebsiella pneumoniae strain Patrick Star | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5160047..5160149 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5160011..5160156 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5M63_RS25365 | 5155141..5157201 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I5M63_RS25370 | 5157205..5157864 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I5M63_RS25375 | 5157943..5158173 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I5M63_RS25380 | 5158286..5158660 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I5M63_RS25385 | 5158664..5159533 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| I5M63_RS25390 | 5159550..5159888 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5160011..5160156 | - | 146 | - | - | Antitoxin |
| - | 5160047..5160149 | + | 103 | - | - | Toxin |
| I5M63_RS25395 | 5160524..5160667 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I5M63_RS25400 | 5160772..5161740 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I5M63_RS25405 | 5161897..5162550 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| I5M63_RS25410 | 5162547..5162738 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I5M63_RS25415 | 5162836..5163075 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I5M63_RS25420 | 5163191..5164624 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182670 NZ_CP065441:5160047-5160149 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT182670 NZ_CP065441:c5160156-5160011 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
