Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3393097..3393242 | Replicon | chromosome |
| Accession | NZ_CP065347 | ||
| Organism | Klebsiella pneumoniae strain ZG2017CW4-4-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3393104..3393206 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3393097..3393242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5I21_RS16650 | 3388629..3390062 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I5I21_RS16655 | 3390178..3390417 | + | 240 | WP_002911393.1 | YebV family protein | - |
| I5I21_RS16660 | 3390515..3390706 | + | 192 | WP_002911395.1 | YebW family protein | - |
| I5I21_RS16665 | 3390703..3391356 | - | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| I5I21_RS16670 | 3391513..3392481 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I5I21_RS16675 | 3392586..3392729 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3393097..3393242 | + | 146 | - | - | Antitoxin |
| - | 3393104..3393206 | - | 103 | - | - | Toxin |
| I5I21_RS16680 | 3393365..3393703 | - | 339 | WP_002911404.1 | YebY family protein | - |
| I5I21_RS16685 | 3393720..3394589 | - | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| I5I21_RS16690 | 3394593..3394967 | - | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| I5I21_RS16695 | 3395080..3395310 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I5I21_RS16700 | 3395389..3396048 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I5I21_RS16705 | 3396052..3398112 | - | 2061 | WP_019705169.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T182411 NZ_CP065347:c3393206-3393104 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT182411 NZ_CP065347:3393097-3393242 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
