Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2059224..2059369 | Replicon | chromosome |
| Accession | NZ_CP064674 | ||
| Organism | Salmonella sp. SJTUF14076 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2059264..2059367 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2059224..2059369 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU143_RS09965 | 2055650..2056348 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| HU143_RS09970 | 2056372..2057028 | - | 657 | WP_023227121.1 | carbon-nitrogen hydrolase family protein | - |
| HU143_RS09975 | 2057136..2057366 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| HU143_RS09980 | 2057504..2057878 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| HU143_RS09985 | 2057879..2058754 | + | 876 | WP_001579467.1 | copper homeostasis membrane protein CopD | - |
| HU143_RS09990 | 2058771..2059124 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2059224..2059369 | - | 146 | - | - | Antitoxin |
| - | 2059264..2059367 | + | 104 | - | - | Toxin |
| HU143_RS09995 | 2059488..2060138 | - | 651 | Protein_1953 | tyrosine-type recombinase/integrase | - |
| HU143_RS10000 | 2060393..2061378 | + | 986 | Protein_1954 | DUF1353 domain-containing protein | - |
| HU143_RS10005 | 2061427..2061536 | + | 110 | Protein_1955 | tail fiber assembly protein | - |
| HU143_RS10010 | 2061627..2061812 | - | 186 | WP_071787785.1 | hypothetical protein | - |
| HU143_RS10015 | 2062248..2063018 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| HU143_RS10020 | 2063499..2063636 | + | 138 | Protein_1958 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2053564..2088069 | 34505 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181394 NZ_CP064674:2059264-2059367 [Salmonella sp. SJTUF14076]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT181394 NZ_CP064674:c2059369-2059224 [Salmonella sp. SJTUF14076]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
