Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 518809..519080 | Replicon | chromosome |
| Accession | NZ_CP064387 | ||
| Organism | Escherichia coli O104:H4 strain PartB-EcoliO104H4-RM8376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 518939..519042 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 518809..519080 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ37_RS02515 | 515364..516026 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IUJ37_RS02520 | 516050..516706 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IUJ37_RS02525 | 516808..517038 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IUJ37_RS02530 | 517177..517551 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IUJ37_RS02535 | 517555..518427 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IUJ37_RS02540 | 518440..518781 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 518809..519080 | - | 272 | - | - | Antitoxin |
| - | 518939..519042 | + | 104 | - | - | Toxin |
| IUJ37_RS02545 | 519177..519833 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| IUJ37_RS02550 | 519834..520025 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IUJ37_RS02555 | 520130..520366 | - | 237 | WP_001295499.1 | YebV family protein | - |
| IUJ37_RS02560 | 520484..521923 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181089 NZ_CP064387:518939-519042 [Escherichia coli O104:H4]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT181089 NZ_CP064387:c519080-518809 [Escherichia coli O104:H4]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
