Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2218663..2218934 | Replicon | chromosome |
| Accession | NZ_CP064383 | ||
| Organism | Escherichia coli O157:H7 strain PartA-EcoliO157H7-RM8376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2218701..2218804 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2218663..2218934 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ36_RS11555 | 2215820..2217259 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IUJ36_RS11560 | 2217377..2217613 | + | 237 | WP_001295499.1 | YebV family protein | - |
| IUJ36_RS11565 | 2217718..2217909 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IUJ36_RS11570 | 2217910..2218566 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2218663..2218934 | + | 272 | - | - | Antitoxin |
| - | 2218701..2218804 | - | 104 | - | - | Toxin |
| IUJ36_RS11575 | 2218962..2219303 | - | 342 | WP_000976483.1 | YebY family protein | - |
| IUJ36_RS11580 | 2219316..2220188 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| IUJ36_RS11585 | 2220192..2220566 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| IUJ36_RS11590 | 2220705..2220935 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IUJ36_RS11595 | 2221037..2221693 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IUJ36_RS11600 | 2221717..2222379 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T181039 NZ_CP064383:c2218804-2218701 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT181039 NZ_CP064383:2218663-2218934 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
