180923

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) timP-timR/-
Location 1315339..1315615 Replicon chromosome
Accession NZ_CP064363
Organism Salmonella enterica subsp. arizonae strain PartD-Sarizonae-RM8376

Toxin (Protein)


Gene name timP Uniprot ID -
Locus tag IUJ39_RS06660 Protein ID WP_244757367.1
Coordinates 1315499..1315615 (+) Length 39 a.a.

Antitoxin (RNA)


Gene name timR
Locus tag -
Coordinates 1315339..1315433 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IUJ39_RS06655 1314403..1315245 + 843 WP_000205488.1 3-mercaptopyruvate sulfurtransferase -
- 1315339..1315433 - 95 - - Antitoxin
IUJ39_RS06660 1315499..1315615 + 117 WP_244757367.1 small toxic inner membrane protein TimP Toxin
IUJ39_RS06665 1315652..1316428 - 777 WP_001289703.1 enhanced serine sensitivity protein SseB -
IUJ39_RS06670 1316535..1317818 - 1284 WP_000133612.1 aminopeptidase PepB -
IUJ39_RS06675 1318067..1318267 - 201 WP_000523621.1 Fe-S cluster assembly protein IscX -
IUJ39_RS06680 1318279..1318614 - 336 WP_001124473.1 ISC system 2Fe-2S type ferredoxin -
IUJ39_RS06685 1318616..1320466 - 1851 WP_038394898.1 Fe-S protein assembly chaperone HscA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 39 a.a.        Molecular weight: 4177.97 Da        Isoelectric Point: 8.7978

>T180923 WP_244757367.1 NZ_CP064363:1315499-1315615 [Salmonella enterica subsp. arizonae]
MKIRCFCVVLLVSGTLCLHTDRSYPGNSVPVALNVQSR

Download         Length: 117 bp

>T180923 NZ_CP085792:3598409-3598512 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 95 bp

>AT180923 NZ_CP064363:c1315433-1315339 [Salmonella enterica subsp. arizonae]
CTACGGTGTGCCTGCGTTGCTAGGGCAACAAAGCCTGCTGGAAAGGCCGCGAACCGGACCAGCACAAAAAAACCGCTCAA
TTGAGCGGTTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References