Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 565348..565489 | Replicon | chromosome |
| Accession | NZ_CP064363 | ||
| Organism | Salmonella enterica subsp. arizonae strain PartD-Sarizonae-RM8376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 565348..565451 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 565348..565489 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ39_RS21745 | 561107..561238 | - | 132 | WP_254899563.1 | hypothetical protein | - |
| IUJ39_RS02875 | 561497..561601 | + | 105 | Protein_569 | DinI-like family protein | - |
| IUJ39_RS02880 | 562038..564395 | - | 2358 | WP_140197964.1 | type III secretion system effector E3 ubiquitin transferase SspH2 | - |
| IUJ39_RS02885 | 564514..564684 | - | 171 | WP_103143133.1 | phage tail protein | - |
| - | 565348..565451 | - | 104 | - | - | Toxin |
| - | 565348..565489 | + | 142 | - | - | Antitoxin |
| IUJ39_RS02890 | 565595..565945 | - | 351 | WP_058819277.1 | YebY family protein | - |
| IUJ39_RS02895 | 565962..566837 | - | 876 | WP_072159161.1 | copper homeostasis membrane protein CopD | - |
| IUJ39_RS02900 | 566838..567212 | - | 375 | WP_038395798.1 | CopC domain-containing protein YobA | - |
| IUJ39_RS02905 | 567350..567580 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| IUJ39_RS02910 | 567688..568344 | + | 657 | WP_038395796.1 | carbon-nitrogen hydrolase family protein | - |
| IUJ39_RS02915 | 568368..569063 | + | 696 | WP_140197965.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180914 NZ_CP064363:c565451-565348 [Salmonella enterica subsp. arizonae]
GGCAAGGCGACGTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACGTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT180914 NZ_CP064363:565348-565489 [Salmonella enterica subsp. arizonae]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTACGTCGCCTTGCCCTTTAAGAATAGATGACAACGCCAGGTTTTCCAGCTTG
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTACGTCGCCTTGCCCTTTAAGAATAGATGACAACGCCAGGTTTTCCAGCTTG
