Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2067993..2068138 | Replicon | chromosome |
| Accession | NZ_CP064246 | ||
| Organism | Klebsiella pneumoniae strain JX-CR-hvKP-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068029..2068131 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2067993..2068138 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS498_RS10200 | 2063123..2065183 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IS498_RS10205 | 2065187..2065846 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IS498_RS10210 | 2065925..2066155 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IS498_RS10215 | 2066268..2066642 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IS498_RS10220 | 2066646..2067515 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| IS498_RS10225 | 2067532..2067870 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2067993..2068138 | - | 146 | - | - | Antitoxin |
| - | 2068029..2068131 | + | 103 | - | - | Toxin |
| IS498_RS10230 | 2068506..2068649 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IS498_RS10235 | 2068754..2069722 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IS498_RS10240 | 2069879..2070532 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IS498_RS10245 | 2070529..2070720 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IS498_RS10250 | 2070818..2071057 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IS498_RS10255 | 2071173..2072606 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180702 NZ_CP064246:2068029-2068131 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180702 NZ_CP064246:c2068138-2067993 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
