Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2010165..2010310 | Replicon | chromosome |
| Accession | NZ_CP064241 | ||
| Organism | Klebsiella pneumoniae strain JX-CR-hvKP-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2010201..2010303 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2010165..2010310 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS502_RS09840 | 2005295..2007355 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IS502_RS09845 | 2007359..2008018 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IS502_RS09850 | 2008097..2008327 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IS502_RS09855 | 2008440..2008814 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IS502_RS09860 | 2008818..2009687 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| IS502_RS09865 | 2009704..2010042 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2010165..2010310 | - | 146 | - | - | Antitoxin |
| - | 2010201..2010303 | + | 103 | - | - | Toxin |
| IS502_RS09870 | 2010678..2010821 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IS502_RS09875 | 2010926..2011894 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IS502_RS09880 | 2012051..2012704 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IS502_RS09885 | 2012701..2012892 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IS502_RS09890 | 2012990..2013229 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IS502_RS09895 | 2013345..2014778 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180671 NZ_CP064241:2010201-2010303 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180671 NZ_CP064241:c2010310-2010165 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
