Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2084130..2084275 | Replicon | chromosome |
| Accession | NZ_CP064205 | ||
| Organism | Klebsiella pneumoniae strain JX-CR-hvKP-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2084166..2084268 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2084130..2084275 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS504_RS10020 | 2079260..2081320 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IS504_RS10025 | 2081324..2081983 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IS504_RS10030 | 2082062..2082292 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IS504_RS10035 | 2082405..2082779 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IS504_RS10040 | 2082783..2083652 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| IS504_RS10045 | 2083669..2084007 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2084130..2084275 | - | 146 | - | - | Antitoxin |
| - | 2084166..2084268 | + | 103 | - | - | Toxin |
| IS504_RS10050 | 2084643..2084786 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IS504_RS10055 | 2084891..2085859 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IS504_RS10060 | 2086016..2086669 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| IS504_RS10065 | 2086666..2086857 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IS504_RS10070 | 2086955..2087194 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IS504_RS10075 | 2087310..2088743 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T180459 NZ_CP064205:2084166-2084268 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT180459 NZ_CP064205:c2084275-2084130 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
