Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 965827..966098 | Replicon | chromosome |
| Accession | NZ_CP064167 | ||
| Organism | Escherichia coli O157:H7 strain Wll001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 965865..965968 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 965827..966098 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMX21_RS05130 | 962984..964423 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IMX21_RS05135 | 964541..964777 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMX21_RS05140 | 964882..965073 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IMX21_RS05145 | 965074..965730 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 965827..966098 | + | 272 | - | - | Antitoxin |
| - | 965865..965968 | - | 104 | - | - | Toxin |
| IMX21_RS05150 | 966126..966467 | - | 342 | WP_000976483.1 | YebY family protein | - |
| IMX21_RS05155 | 966480..967352 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| IMX21_RS05160 | 967356..967730 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| IMX21_RS05165 | 967869..968099 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMX21_RS05170 | 968201..968857 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| IMX21_RS05175 | 968881..969543 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180375 NZ_CP064167:c965968-965865 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT180375 NZ_CP064167:965827-966098 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
