Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2325338..2325609 | Replicon | chromosome |
| Accession | NZ_CP064103 | ||
| Organism | Escherichia coli strain IR53017 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2325468..2325571 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2325338..2325609 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISU84_RS10965 | 2321893..2322555 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ISU84_RS10970 | 2322579..2323235 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| ISU84_RS10975 | 2323337..2323567 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ISU84_RS10980 | 2323706..2324080 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| ISU84_RS10985 | 2324084..2324956 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| ISU84_RS10990 | 2324969..2325310 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2325338..2325609 | - | 272 | - | - | Antitoxin |
| - | 2325468..2325571 | + | 104 | - | - | Toxin |
| ISU84_RS10995 | 2325706..2326362 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| ISU84_RS11000 | 2326363..2326554 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ISU84_RS11005 | 2326659..2326895 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ISU84_RS11010 | 2327013..2328452 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T180129 NZ_CP064103:2325468-2325571 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT180129 NZ_CP064103:c2325609-2325338 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
