Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046303..2046450 | Replicon | chromosome |
| Accession | NZ_CP064044 | ||
| Organism | Klebsiella quasipneumoniae strain BM404-3-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046307..2046409 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046303..2046450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA72_RS09995 | 2041819..2043252 | + | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA72_RS10000 | 2043369..2043608 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA72_RS10005 | 2043706..2043897 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA72_RS10010 | 2043894..2044547 | - | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| ISA72_RS10015 | 2044704..2045672 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| ISA72_RS10020 | 2045776..2045919 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 2046303..2046450 | + | 148 | - | - | Antitoxin |
| - | 2046307..2046409 | - | 103 | - | - | Toxin |
| ISA72_RS10025 | 2046568..2046906 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ISA72_RS10030 | 2046923..2047792 | - | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| ISA72_RS10035 | 2047796..2048170 | - | 375 | WP_064794753.1 | CopC domain-containing protein YobA | - |
| ISA72_RS10040 | 2048283..2048513 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ISA72_RS10045 | 2048592..2049251 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ISA72_RS10050 | 2049255..2051315 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179978 NZ_CP064044:c2046409-2046307 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT179978 NZ_CP064044:2046303-2046450 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
