Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2999102..2999248 | Replicon | chromosome |
| Accession | NZ_CP063955 | ||
| Organism | Klebsiella aerogenes strain S148-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2999110..2999213 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2999102..2999248 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOP81_RS14070 | 2994404..2994922 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| IOP81_RS14075 | 2994940..2995689 | + | 750 | WP_045360586.1 | molecular chaperone | - |
| IOP81_RS14080 | 2995692..2998016 | + | 2325 | WP_045360584.1 | fimbria/pilus outer membrane usher protein | - |
| IOP81_RS14085 | 2998029..2998982 | + | 954 | WP_080940469.1 | spore coat U domain-containing protein | - |
| - | 2999102..2999248 | + | 147 | - | - | Antitoxin |
| - | 2999110..2999213 | - | 104 | - | - | Toxin |
| IOP81_RS14090 | 2999370..2999711 | - | 342 | WP_015705946.1 | YebY family protein | - |
| IOP81_RS14095 | 2999725..3000594 | - | 870 | WP_045360582.1 | copper homeostasis membrane protein CopD | - |
| IOP81_RS14100 | 3000598..3000972 | - | 375 | WP_242814150.1 | CopC domain-containing protein YobA | - |
| IOP81_RS14105 | 3001107..3001337 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| IOP81_RS14110 | 3001417..3002076 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| IOP81_RS14115 | 3002079..3004139 | - | 2061 | WP_015705949.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T179849 NZ_CP063955:c2999213-2999110 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT179849 NZ_CP063955:2999102-2999248 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
