Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4143740..4143884 | Replicon | chromosome |
| Accession | NZ_CP063921 | ||
| Organism | Klebsiella variicola strain BM366-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4143776..4143878 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4143740..4143884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA73_RS19745 | 4138870..4140930 | + | 2061 | WP_032746815.1 | oligopeptidase B | - |
| ISA73_RS19750 | 4140934..4141593 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA73_RS19755 | 4141672..4141902 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA73_RS19760 | 4142016..4142390 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISA73_RS19765 | 4142394..4143263 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA73_RS19770 | 4143280..4143618 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 4143740..4143884 | - | 145 | - | - | Antitoxin |
| - | 4143776..4143878 | + | 103 | - | - | Toxin |
| ISA73_RS19775 | 4144263..4144406 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| ISA73_RS19780 | 4144510..4145478 | - | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISA73_RS19785 | 4145635..4146288 | + | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA73_RS19790 | 4146285..4146476 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA73_RS19795 | 4146574..4146813 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA73_RS19800 | 4146929..4148362 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179531 NZ_CP063921:4143776-4143878 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179531 NZ_CP063921:c4143884-4143740 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
