Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4969332..4969476 | Replicon | chromosome |
| Accession | NZ_CP063912 | ||
| Organism | Klebsiella variicola strain BS359-2-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4969368..4969470 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4969332..4969476 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA79_RS23930 | 4964462..4966522 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| ISA79_RS23935 | 4966526..4967185 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| ISA79_RS23940 | 4967264..4967494 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA79_RS23945 | 4967608..4967982 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| ISA79_RS23950 | 4967986..4968855 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA79_RS23955 | 4968872..4969210 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 4969332..4969476 | - | 145 | - | - | Antitoxin |
| - | 4969368..4969470 | + | 103 | - | - | Toxin |
| ISA79_RS23960 | 4969855..4969998 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| ISA79_RS23965 | 4970102..4971070 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| ISA79_RS23970 | 4971227..4971880 | + | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA79_RS23975 | 4971877..4972068 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ISA79_RS23980 | 4972166..4972405 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ISA79_RS23985 | 4972521..4973954 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179421 NZ_CP063912:4969368-4969470 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179421 NZ_CP063912:c4969476-4969332 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
