Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1420034..1420178 | Replicon | chromosome |
| Accession | NZ_CP063910 | ||
| Organism | Klebsiella variicola strain BS325-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1420040..1420142 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1420034..1420178 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ISA81_RS07045 | 1415556..1416989 | + | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ISA81_RS07050 | 1417105..1417344 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ISA81_RS07055 | 1417442..1417633 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ISA81_RS07060 | 1417630..1418283 | - | 654 | WP_012967753.1 | protein-serine/threonine phosphatase | - |
| ISA81_RS07065 | 1418440..1419408 | + | 969 | WP_194387062.1 | VirK/YbjX family protein | - |
| ISA81_RS07070 | 1419512..1419655 | + | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| - | 1420034..1420178 | + | 145 | - | - | Antitoxin |
| - | 1420040..1420142 | - | 103 | - | - | Toxin |
| ISA81_RS07075 | 1420300..1420638 | - | 339 | WP_008804271.1 | YebY family protein | - |
| ISA81_RS07080 | 1420655..1421524 | - | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| ISA81_RS07085 | 1421528..1421902 | - | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| ISA81_RS07090 | 1422016..1422246 | + | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| ISA81_RS07095 | 1422325..1422984 | + | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| ISA81_RS07100 | 1422988..1425048 | - | 2061 | WP_032746815.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179379 NZ_CP063910:c1420142-1420040 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT179379 NZ_CP063910:1420034-1420178 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
