Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 912407..912552 | Replicon | chromosome |
| Accession | NZ_CP063858 | ||
| Organism | Klebsiella pneumoniae strain M1026-3Ar | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 912414..912516 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 912407..912552 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOD46_RS04575 | 907938..909371 | + | 1434 | WP_194315361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IOD46_RS04580 | 909487..909726 | + | 240 | WP_002911393.1 | YebV family protein | - |
| IOD46_RS04585 | 909824..910015 | + | 192 | WP_002911395.1 | YebW family protein | - |
| IOD46_RS04590 | 910012..910665 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| IOD46_RS04595 | 910822..911790 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| IOD46_RS04600 | 911895..912038 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 912407..912552 | + | 146 | - | - | Antitoxin |
| - | 912414..912516 | - | 103 | - | - | Toxin |
| IOD46_RS04605 | 912675..913013 | - | 339 | WP_002911404.1 | YebY family protein | - |
| IOD46_RS04610 | 913030..913899 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| IOD46_RS04615 | 913903..914277 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IOD46_RS04620 | 914390..914620 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IOD46_RS04625 | 914699..915358 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| IOD46_RS04630 | 915362..917422 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T179006 NZ_CP063858:c912516-912414 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT179006 NZ_CP063858:912407-912552 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
