Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2727744..2728015 | Replicon | chromosome |
| Accession | NZ_CP063483 | ||
| Organism | Escherichia coli strain EM03-18-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2727874..2727977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2727744..2728015 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS21_RS13035 | 2724299..2724961 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IQS21_RS13040 | 2724985..2725641 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IQS21_RS13045 | 2725743..2725973 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS21_RS13050 | 2726112..2726486 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IQS21_RS13055 | 2726490..2727362 | + | 873 | WP_039268383.1 | copper homeostasis membrane protein CopD | - |
| IQS21_RS13060 | 2727375..2727716 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2727744..2728015 | - | 272 | - | - | Antitoxin |
| - | 2727874..2727977 | + | 104 | - | - | Toxin |
| IQS21_RS13065 | 2728112..2728768 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| IQS21_RS13070 | 2728769..2728960 | - | 192 | WP_000457842.1 | YebW family protein | - |
| IQS21_RS13075 | 2729065..2729301 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS21_RS13080 | 2729419..2730858 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178420 NZ_CP063483:2727874-2727977 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178420 NZ_CP063483:c2728015-2727744 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
