Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2588167..2588438 | Replicon | chromosome |
| Accession | NZ_CP063473 | ||
| Organism | Escherichia coli strain EM18-18-42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2588205..2588308 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2588167..2588438 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS24_RS12620 | 2585324..2586763 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IQS24_RS12625 | 2586881..2587117 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IQS24_RS12630 | 2587222..2587413 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IQS24_RS12635 | 2587414..2588070 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2588167..2588438 | + | 272 | - | - | Antitoxin |
| - | 2588205..2588308 | - | 104 | - | - | Toxin |
| IQS24_RS12640 | 2588465..2588806 | - | 342 | WP_000976472.1 | YebY family protein | - |
| IQS24_RS12645 | 2588819..2589691 | - | 873 | WP_205595400.1 | copper homeostasis membrane protein CopD | - |
| IQS24_RS12650 | 2589695..2590069 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IQS24_RS12655 | 2590208..2590438 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS24_RS12660 | 2590540..2591196 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IQS24_RS12665 | 2591220..2591882 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178338 NZ_CP063473:c2588308-2588205 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178338 NZ_CP063473:2588167-2588438 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
