Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 797167..797438 | Replicon | chromosome |
| Accession | NZ_CP063467 | ||
| Organism | Escherichia coli strain EM20-18-50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 797297..797400 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 797167..797438 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQS25_RS03770 | 793722..794384 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IQS25_RS03775 | 794408..795064 | - | 657 | WP_203139534.1 | carbon-nitrogen hydrolase family protein | - |
| IQS25_RS03780 | 795166..795396 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IQS25_RS03785 | 795535..795909 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IQS25_RS03790 | 795913..796785 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IQS25_RS03795 | 796798..797139 | + | 342 | WP_072651707.1 | YebY family protein | - |
| - | 797167..797438 | - | 272 | - | - | Antitoxin |
| - | 797297..797400 | + | 104 | - | - | Toxin |
| IQS25_RS03800 | 797535..798191 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IQS25_RS03805 | 798192..798383 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IQS25_RS03810 | 798488..798724 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IQS25_RS03815 | 798842..800281 | - | 1440 | WP_203139536.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T178309 NZ_CP063467:797297-797400 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT178309 NZ_CP063467:c797438-797167 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
