Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3939233..3939504 | Replicon | chromosome |
| Accession | NZ_CP063349 | ||
| Organism | Escherichia coli strain BS15R-A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3939271..3939374 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3939233..3939504 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IN859_RS19090 | 3936390..3937829 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IN859_RS19095 | 3937947..3938183 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IN859_RS19100 | 3938288..3938479 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IN859_RS19105 | 3938480..3939136 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3939233..3939504 | + | 272 | - | - | Antitoxin |
| - | 3939271..3939374 | - | 104 | - | - | Toxin |
| IN859_RS19110 | 3939532..3939873 | - | 342 | WP_000976492.1 | YebY family protein | - |
| IN859_RS19115 | 3939886..3940758 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IN859_RS19120 | 3940762..3941136 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IN859_RS19125 | 3941275..3941505 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IN859_RS19130 | 3941607..3942263 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IN859_RS19135 | 3942287..3942949 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177979 NZ_CP063349:c3939374-3939271 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177979 NZ_CP063349:3939233-3939504 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
