Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1043244..1043512 | Replicon | chromosome |
| Accession | NZ_CP063214 | ||
| Organism | Escherichia coli strain ERP001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1043282..1043384 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1043244..1043512 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL987_RS05290 | 1040401..1041840 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IL987_RS05295 | 1041958..1042194 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IL987_RS05300 | 1042299..1042490 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IL987_RS05305 | 1042491..1043147 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1043244..1043512 | + | 269 | - | - | Antitoxin |
| - | 1043282..1043384 | - | 103 | - | - | Toxin |
| IL987_RS05310 | 1043542..1043883 | - | 342 | WP_000984819.1 | YebY family protein | - |
| IL987_RS05315 | 1043896..1044768 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| IL987_RS05320 | 1044772..1045146 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IL987_RS05325 | 1045285..1045515 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IL987_RS05330 | 1045618..1046274 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| IL987_RS05335 | 1046298..1046960 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T177706 NZ_CP063214:c1043384-1043282 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT177706 NZ_CP063214:1043244-1043512 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
