Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1939044..1939315 | Replicon | chromosome |
| Accession | NZ_CP062889 | ||
| Organism | Escherichia coli O100:H21 strain Res13-Lact-ER07-18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1939174..1939277 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1939044..1939315 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP41_RS09255 | 1935599..1936261 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP41_RS09260 | 1936285..1936941 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| IMP41_RS09265 | 1937043..1937273 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP41_RS09270 | 1937412..1937786 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IMP41_RS09275 | 1937790..1938662 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| IMP41_RS09280 | 1938675..1939016 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1939044..1939315 | - | 272 | - | - | Antitoxin |
| - | 1939174..1939277 | + | 104 | - | - | Toxin |
| IMP41_RS09285 | 1939412..1940068 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| IMP41_RS09290 | 1940069..1940260 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IMP41_RS09295 | 1940365..1940601 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP41_RS09300 | 1940719..1942158 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177156 NZ_CP062889:1939174-1939277 [Escherichia coli O100:H21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177156 NZ_CP062889:c1939315-1939044 [Escherichia coli O100:H21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
