Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 325250..325521 | Replicon | chromosome |
| Accession | NZ_CP062876 | ||
| Organism | Escherichia coli O157:H16 strain Res13-Lact-PEA12-26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 325380..325483 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 325250..325521 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP69_RS01585 | 321805..322467 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMP69_RS01590 | 322491..323147 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IMP69_RS01595 | 323249..323479 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMP69_RS01600 | 323618..323992 | + | 375 | WP_195686609.1 | CopC domain-containing protein YobA | - |
| IMP69_RS01605 | 323996..324868 | + | 873 | WP_195686610.1 | copper homeostasis membrane protein CopD | - |
| IMP69_RS01610 | 324881..325222 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 325250..325521 | - | 272 | - | - | Antitoxin |
| - | 325380..325483 | + | 104 | - | - | Toxin |
| IMP69_RS01615 | 325618..326274 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| IMP69_RS01620 | 326275..326466 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IMP69_RS01625 | 326571..326807 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMP69_RS01630 | 326925..328364 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T177073 NZ_CP062876:325380-325483 [Escherichia coli O157:H16]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT177073 NZ_CP062876:c325521-325250 [Escherichia coli O157:H16]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
