Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936393..1936664 | Replicon | chromosome |
| Accession | NZ_CP062851 | ||
| Organism | Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936523..1936626 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936393..1936664 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ03_RS09180 | 1932948..1933610 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMQ03_RS09185 | 1933634..1934290 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| IMQ03_RS09190 | 1934392..1934622 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMQ03_RS09195 | 1934761..1935135 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IMQ03_RS09200 | 1935139..1936011 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IMQ03_RS09205 | 1936024..1936365 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1936393..1936664 | - | 272 | - | - | Antitoxin |
| - | 1936523..1936626 | + | 104 | - | - | Toxin |
| IMQ03_RS09210 | 1936761..1937417 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IMQ03_RS09215 | 1937418..1937609 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IMQ03_RS09220 | 1937714..1937950 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IMQ03_RS09225 | 1938068..1939507 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T176852 NZ_CP062851:1936523-1936626 [Escherichia coli O9:H10]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176852 NZ_CP062851:c1936664-1936393 [Escherichia coli O9:H10]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
