Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2019921..2020192 | Replicon | chromosome |
| Accession | NZ_CP062832 | ||
| Organism | Escherichia coli strain Res13-Lact-PER04-33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020052..2020154 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2019921..2020192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ22_RS09660 | 2016476..2017138 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMQ22_RS09665 | 2017162..2017818 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IMQ22_RS09670 | 2017920..2018150 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMQ22_RS09675 | 2018289..2018663 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IMQ22_RS09680 | 2018667..2019539 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IMQ22_RS09685 | 2019552..2019893 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2019921..2020192 | - | 272 | - | - | Antitoxin |
| - | 2020052..2020154 | + | 103 | - | - | Toxin |
| IMQ22_RS09690 | 2020289..2020945 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| IMQ22_RS09695 | 2020946..2021137 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IMQ22_RS09700 | 2021242..2021478 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMQ22_RS09705 | 2021596..2023035 | - | 1440 | WP_130082408.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T176781 NZ_CP062832:2020052-2020154 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176781 NZ_CP062832:c2020192-2019921 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCACTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCACTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
