Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078781..2079052 | Replicon | chromosome |
| Accession | NZ_CP062811 | ||
| Organism | Escherichia coli strain Res13-Sevr-PER07-33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078911..2079014 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078781..2079052 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMQ59_RS09915 | 2075336..2075998 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IMQ59_RS09920 | 2076022..2076678 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IMQ59_RS09925 | 2076780..2077010 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IMQ59_RS09930 | 2077149..2077523 | + | 375 | WP_001537038.1 | CopC domain-containing protein YobA | - |
| IMQ59_RS09935 | 2077527..2078399 | + | 873 | WP_021574639.1 | copper homeostasis membrane protein CopD | - |
| IMQ59_RS09940 | 2078412..2078753 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2078781..2079052 | - | 272 | - | - | Antitoxin |
| - | 2078911..2079014 | + | 104 | - | - | Toxin |
| IMQ59_RS09945 | 2079149..2079805 | + | 657 | WP_195691403.1 | protein-serine/threonine phosphatase | - |
| IMQ59_RS09950 | 2079806..2079997 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IMQ59_RS09955 | 2080102..2080338 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IMQ59_RS09960 | 2080456..2081895 | - | 1440 | WP_024192048.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T176637 NZ_CP062811:2078911-2079014 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT176637 NZ_CP062811:c2079052-2078781 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
