Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 1781..2340 Replicon plasmid pZ1814-1
Accession NZ_CP062724
Organism Escherichia coli O157:H7 strain Z1814

Toxin (Protein)


Gene name relE Uniprot ID O82928
Locus tag ILQ53_RS27365 Protein ID WP_000421248.1
Coordinates 2065..2340 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID C1J8K5
Locus tag ILQ53_RS27360 Protein ID WP_001178089.1
Coordinates 1781..2065 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ53_RS27355 13..870 + 858 WP_000130945.1 incFII family plasmid replication initiator RepA -
ILQ53_RS27360 1781..2065 + 285 WP_001178089.1 ribbon-helix-helix domain-containing protein Antitoxin
ILQ53_RS27365 2065..2340 + 276 WP_000421248.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ILQ53_RS27370 2435..2641 + 207 WP_001105064.1 hypothetical protein -
ILQ53_RS27375 2741..2956 - 216 Protein_5 transposase -
ILQ53_RS27380 3000..3566 - 567 Protein_6 IS3-like element IS600 family transposase -
ILQ53_RS27385 3566..3981 - 416 Protein_7 transposase zinc-binding domain-containing protein -
ILQ53_RS27390 3981..4166 - 186 WP_001302179.1 hypothetical protein -
ILQ53_RS27395 4343..6553 + 2211 WP_000592771.1 catalase/peroxidase KatP -
ILQ53_RS27400 6689..6985 + 297 WP_071527595.1 cytochrome B562 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - espP / stcE / exeE / exeF / exeG / hlyC / hlyA / hlyB / hlyD / toxB / toxB / toxB / toxB 1..92747 92747


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(14-51)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10735.42 Da        Isoelectric Point: 9.9324

>T175756 WP_000421248.1 NZ_CP062724:2065-2340 [Escherichia coli O157:H7]
MELKWSSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELNGQTIY
VLRLWHTRENR

Download         Length: 276 bp

>T175756 NZ_CP082179:17352-17645 [Xanthomonas fragariae]
GTGCCACACGTAATCATCACGGAAGGCGCAGGCCAAGGATTGGAGTGCTGCCGGCGCTTTTTGGCCAGTAAAAGTCCGGA
AGCAGCCCGGCGAGCCGCAAAGGCCATCGAGCGGCAATTCCTGTTGCTGGAAACGACCCCGGCCATCGGCCGCCCTTTTT
CCGAGCAACCGGAGTGGAGCGAGTTGGTCATCGAATTCGGTGATTCCGGCTATGTAGCCTTGTATCGCCACGAAGCTGCA
GAGGATGTCGTTTACGTGCTGGCTTTCCGACATCAGAAGGAAGTGGGATATTGA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10474.89 Da        Isoelectric Point: 5.6558

>AT175756 WP_001178089.1 NZ_CP062724:1781-2065 [Escherichia coli O157:H7]
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR

Download         Length: 285 bp

>AT175756 NZ_CP082179:17092-17364 [Xanthomonas fragariae]
ATGGCAACGTCACTAAAAATCGACGACGAGCTGAAGGGGCGCGTGCAGCACCTGGCCAGCCTGCGCGATCGGTCGCCACA
CTGGATCATGCGTGAAGCGATCAAGCAGTACGTGGAGCTGGAAGAAGCTCGCGAAAGTTTTAAGCAGGAAGCGCAGGCAT
CCTGGATCGCCTATCAGGAAACCGGCCGGCATTTGACCGGGCAGGAGGCGCGCGCGTGGTTGAACACCTGGGGCACGGAC
AACGAAACGGGTTTGCCTGAGTGCCACACGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2Z6FAZ0

Antitoxin

Source ID Structure
AlphaFold DB A0A731IHA8

References