Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yeeUV (cbtA-cbeA)/CbtA-CbeA
Location 2070594..2071425 Replicon chromosome
Accession NZ_CP062248
Organism Escherichia coli strain AML002_ev02

Toxin (Protein)


Gene name yeeV Uniprot ID S1P968
Locus tag IHN47_RS10235 Protein ID WP_000854814.1
Coordinates 2071051..2071425 (+) Length 125 a.a.

Antitoxin (Protein)


Gene name yeeU Uniprot ID P76364
Locus tag IHN47_RS10230 Protein ID WP_001285584.1
Coordinates 2070594..2070962 (+) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN47_RS10215 2068261..2069793 + 1533 WP_001350525.1 hypothetical protein -
IHN47_RS10220 2069790..2070236 + 447 WP_000187523.1 RadC family protein -
IHN47_RS10225 2070299..2070520 + 222 WP_000692323.1 DUF987 domain-containing protein -
IHN47_RS10230 2070594..2070962 + 369 WP_001285584.1 type IV toxin-antitoxin system toxin CbtA Antitoxin
IHN47_RS10235 2071051..2071425 + 375 WP_000854814.1 type IV toxin-antitoxin system toxin CbtA Toxin
IHN47_RS10240 2071422..2071616 + 195 WP_000988600.1 hypothetical protein -
IHN47_RS10245 2071629..2071742 + 114 WP_001161660.1 DUF957 domain-containing protein -
IHN47_RS10250 2072031..2072159 - 129 Protein_2002 transposase domain-containing protein -
IHN47_RS10255 2072231..2072413 + 183 WP_001016348.1 hypothetical protein -
IHN47_RS10260 2072514..2072843 - 330 WP_000450409.1 DUF496 family protein -
IHN47_RS10265 2073015..2074073 - 1059 WP_001200891.1 FUSC family protein -
IHN47_RS10270 2074271..2074744 - 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
IHN47_RS10275 2074863..2076029 - 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-112)

Antitoxin

Antitoxin CbeA

(18-117)


Sequences

Toxin        


Download         Length: 125 a.a.        Molecular weight: 13898.94 Da        Isoelectric Point: 7.8522

>T174042 WP_000854814.1 NZ_CP062248:2071051-2071425 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK

Download         Length: 375 bp

>T174042 NZ_CP080512:4495910-4496260 [Pseudomonas protegens]
ATGAATGCTCTGTTTATTGAACTACCGGCATTTGCGCGATACCGAAAGGACTTCCTTGACGACGAGTTGTTCTGCGAACT
GCAGATCGAGTTGCTGCGCCACCCGCACGCGGGTGTTCTGATTAAGGGCACTGGCGGCTTGCGCAAGATGCGTTTCGTCG
ATGAGCGACGCAATAAGGGCAGGCGTGGCGGGCTGAGGGTGATTTATTACTGGTGGTCCGGAGGAGCACAGTTCTGGCTC
TTCACCCTGTTCGACAAGGAGCAGATGGACGACCTGCTACCGCAGCAGCGACAACAGCTCAAACAACTGCTGGAACGTGA
AATCGAGGCCAGAAGACATGACCAAACGTGA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 13651.52 Da        Isoelectric Point: 5.9541

>AT174042 WP_001285584.1 NZ_CP062248:2070594-2070962 [Escherichia coli]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPTPEMKN

Download         Length: 369 bp

>AT174042 NZ_CP080512:4496247-4496564 [Pseudomonas protegens]
ATGACCAAACGTGACATCTTTTCCGAACTGGTTGAAGGCATCGACGCCCTCACCCAGGAACGCCAGGGCAAGATCACCCT
GCGCAGCCATAAAGTGAAACTCGACAAGCTGCCCCCCATCACCGCCGCCGAGGTGATGAACATCCGCCAGCAACTCAACC
TCTCGCGCTCGGTGTTCGCCATGTACCTGCGCACCAACACCCGCACCCTGGAGAACTGGGAACAGGGCCGCGCCATACCC
AACGCCCAGGCCACGACCTTGATACGCCTGGTGGAGCGCTACCCCGATACAGTGGAGCGCCTCGCTTCGCTGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829FY50

Antitoxin

Source ID Structure
PDB 2H28
AlphaFold DB A0A1M2E8G6

References