Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 6174085..6174253 | Replicon | chromosome |
| Accession | NZ_CP061930 | ||
| Organism | Klebsiella michiganensis strain BD-50-Km | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 6174092..6174195 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 6174085..6174253 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IE970_RS29280 | 6169359..6169877 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| IE970_RS29285 | 6169896..6170660 | + | 765 | WP_200519090.1 | fimbria/pilus periplasmic chaperone | - |
| IE970_RS29290 | 6170663..6172993 | + | 2331 | WP_047723554.1 | fimbrial biogenesis outer membrane usher protein | - |
| IE970_RS29295 | 6173008..6173967 | + | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| - | 6174085..6174253 | + | 169 | - | - | Antitoxin |
| - | 6174092..6174195 | - | 104 | - | - | Toxin |
| IE970_RS29300 | 6174353..6174691 | - | 339 | WP_004103344.1 | YebY family protein | - |
| IE970_RS29305 | 6174708..6175577 | - | 870 | WP_200519091.1 | copper homeostasis membrane protein CopD | - |
| IE970_RS29310 | 6175582..6175956 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| IE970_RS29315 | 6176092..6176322 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| IE970_RS29320 | 6176401..6177060 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| IE970_RS29325 | 6177067..6179127 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T173182 NZ_CP061930:c6174195-6174092 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT173182 NZ_CP061930:6174085-6174253 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
