Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2687846..2687990 | Replicon | chromosome |
| Accession | NZ_CP061801 | ||
| Organism | Enterobacter mori strain HSW1412 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2687851..2687955 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2687846..2687990 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IDM36_RS12695 | 2684028..2685470 | + | 1443 | WP_196390104.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IDM36_RS12700 | 2685576..2685815 | + | 240 | WP_182271794.1 | YebV family protein | - |
| IDM36_RS12705 | 2685854..2686498 | - | 645 | WP_182271795.1 | protein-serine/threonine phosphatase | - |
| IDM36_RS12710 | 2686677..2687618 | + | 942 | WP_196390105.1 | VirK/YbjX family protein | - |
| - | 2687846..2687990 | + | 145 | - | - | Antitoxin |
| - | 2687851..2687955 | - | 105 | - | - | Toxin |
| IDM36_RS12715 | 2688094..2688432 | - | 339 | WP_182271799.1 | YebY family protein | - |
| IDM36_RS12720 | 2688449..2689318 | - | 870 | WP_196390106.1 | copper homeostasis membrane protein CopD | - |
| IDM36_RS12725 | 2689320..2689691 | - | 372 | WP_182271801.1 | CopC domain-containing protein YobA | - |
| IDM36_RS12730 | 2689829..2690059 | + | 231 | WP_182271802.1 | DNA polymerase III subunit theta | - |
| IDM36_RS12735 | 2690170..2690820 | + | 651 | WP_196390107.1 | carbon-nitrogen hydrolase family protein | - |
| IDM36_RS12740 | 2690845..2691507 | + | 663 | WP_182271804.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T173037 NZ_CP061801:c2687955-2687851 [Enterobacter mori]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT173037 NZ_CP061801:2687846-2687990 [Enterobacter mori]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
