Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078109..2078380 | Replicon | chromosome |
| Accession | NZ_CP061758 | ||
| Organism | Escherichia coli O68:H12 strain 97.3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078239..2078342 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078109..2078380 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEC98_RS09850 | 2074664..2075326 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IEC98_RS09855 | 2075350..2076006 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IEC98_RS09860 | 2076108..2076338 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IEC98_RS09865 | 2076477..2076851 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IEC98_RS09870 | 2076855..2077727 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IEC98_RS09875 | 2077740..2078081 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2078109..2078380 | - | 272 | - | - | Antitoxin |
| - | 2078239..2078342 | + | 104 | - | - | Toxin |
| IEC98_RS09880 | 2078477..2079133 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IEC98_RS09885 | 2079134..2079325 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IEC98_RS09890 | 2079430..2079666 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IEC98_RS09895 | 2079784..2081223 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172935 NZ_CP061758:2078239-2078342 [Escherichia coli O68:H12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172935 NZ_CP061758:c2078380-2078109 [Escherichia coli O68:H12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
