Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2193861..2194132 | Replicon | chromosome |
| Accession | NZ_CP061749 | ||
| Organism | Escherichia coli O15:H12 strain 2273-PO3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193991..2194094 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2193861..2194132 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IED00_RS10485 | 2190416..2191078 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IED00_RS10490 | 2191102..2191758 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IED00_RS10495 | 2191860..2192090 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IED00_RS10500 | 2192229..2192603 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| IED00_RS10505 | 2192607..2193479 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| IED00_RS10510 | 2193492..2193833 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2193861..2194132 | - | 272 | - | - | Antitoxin |
| - | 2193991..2194094 | + | 104 | - | - | Toxin |
| IED00_RS10515 | 2194229..2194885 | + | 657 | WP_000812740.1 | protein-serine/threonine phosphatase | - |
| IED00_RS10520 | 2194886..2195077 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IED00_RS10525 | 2195182..2195418 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IED00_RS10530 | 2195536..2196975 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172876 NZ_CP061749:2193991-2194094 [Escherichia coli O15:H12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172876 NZ_CP061749:c2194132-2193861 [Escherichia coli O15:H12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
