Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2494756..2494989 | Replicon | chromosome |
| Accession | NZ_CP061527 | ||
| Organism | Shigella dysenteriae strain HNCMB 20080 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2494756..2494859 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2494756..2494989 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC625_RS13235 | 2490520..2490639 | - | 120 | WP_001131442.1 | hypothetical protein | - |
| IC625_RS13240 | 2490600..2490785 | - | 186 | WP_023637031.1 | hypothetical protein | - |
| IC625_RS13250 | 2491823..2492104 | + | 282 | WP_194947008.1 | excisionase | - |
| IC625_RS13255 | 2492219..2492915 | - | 697 | Protein_2592 | IS1 family transposase | - |
| IC625_RS13260 | 2492992..2494148 | + | 1157 | WP_134801760.1 | IS3-like element IS600 family transposase | - |
| IC625_RS13265 | 2494194..2494634 | + | 441 | Protein_2594 | tyrosine-type recombinase/integrase | - |
| - | 2494756..2494859 | - | 104 | - | - | Toxin |
| - | 2494756..2494989 | + | 234 | - | - | Antitoxin |
| IC625_RS13270 | 2495017..2495358 | - | 342 | WP_134802023.1 | YebY family protein | - |
| IC625_RS13275 | 2495371..2496243 | - | 873 | WP_000879288.1 | copper homeostasis membrane protein CopD | - |
| IC625_RS13280 | 2496247..2496621 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| IC625_RS13285 | 2496760..2496990 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IC625_RS13290 | 2497092..2497748 | + | 657 | WP_000896381.1 | carbon-nitrogen hydrolase family protein | - |
| IC625_RS13295 | 2497772..2498434 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172694 NZ_CP061527:c2494859-2494756 [Shigella dysenteriae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT172694 NZ_CP061527:2494756-2494989 [Shigella dysenteriae]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATA
AAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
