Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1848294..1848439 | Replicon | chromosome |
| Accession | NZ_CP061380 | ||
| Organism | Klebsiella pneumoniae strain NU-CRE236 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1848330..1848432 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1848294..1848439 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCV86_RS08905 | 1843424..1845484 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HCV86_RS08910 | 1845488..1846147 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HCV86_RS08915 | 1846226..1846456 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HCV86_RS08920 | 1846569..1846943 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HCV86_RS08925 | 1846947..1847816 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HCV86_RS08930 | 1847833..1848171 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 1848294..1848439 | - | 146 | - | - | Antitoxin |
| - | 1848330..1848432 | + | 103 | - | - | Toxin |
| HCV86_RS08935 | 1848806..1848949 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HCV86_RS08940 | 1849054..1850022 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HCV86_RS08945 | 1850179..1850832 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| HCV86_RS08950 | 1850829..1851020 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HCV86_RS08955 | 1851118..1851357 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HCV86_RS08960 | 1851473..1852906 | - | 1434 | WP_167580712.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T172535 NZ_CP061380:1848330-1848432 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT172535 NZ_CP061380:c1848439-1848294 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
