Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2940588..2941422 | Replicon | chromosome |
| Accession | NZ_CP061206 | ||
| Organism | Escherichia coli strain DA61218 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PLF5 |
| Locus tag | ICI53_RS13805 | Protein ID | WP_000854690.1 |
| Coordinates | 2940588..2940965 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1P7N8 |
| Locus tag | ICI53_RS13810 | Protein ID | WP_001305076.1 |
| Coordinates | 2941054..2941422 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICI53_RS13775 | 2936982..2937137 | - | 156 | WP_000729638.1 | hypothetical protein | - |
| ICI53_RS13780 | 2937569..2938502 | - | 934 | Protein_2680 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| ICI53_RS13785 | 2938495..2938890 | - | 396 | WP_000208382.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| ICI53_RS13790 | 2938959..2939804 | - | 846 | WP_001529401.1 | DUF4942 domain-containing protein | - |
| ICI53_RS13795 | 2939889..2940086 | - | 198 | WP_000839293.1 | DUF957 domain-containing protein | - |
| ICI53_RS13800 | 2940103..2940591 | - | 489 | WP_000761699.1 | hypothetical protein | - |
| ICI53_RS13805 | 2940588..2940965 | - | 378 | WP_000854690.1 | TA system toxin CbtA family protein | Toxin |
| ICI53_RS13810 | 2941054..2941422 | - | 369 | WP_001305076.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| ICI53_RS13815 | 2941472..2942116 | - | 645 | WP_000094916.1 | hypothetical protein | - |
| ICI53_RS13820 | 2942135..2942356 | - | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| ICI53_RS13825 | 2942419..2942895 | - | 477 | WP_001186726.1 | RadC family protein | - |
| ICI53_RS13830 | 2942911..2943396 | - | 486 | WP_000849565.1 | antirestriction protein | - |
| ICI53_RS13835 | 2943451..2944269 | - | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| ICI53_RS13840 | 2944370..2944603 | - | 234 | WP_000902034.1 | DUF905 family protein | - |
| ICI53_RS13845 | 2944682..2945137 | - | 456 | WP_000581502.1 | hypothetical protein | - |
| ICI53_RS13850 | 2945213..2946340 | - | 1128 | Protein_2694 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ugd / kpsS / kpsC / kpsU / kpsD / kpsE / kpsF / sat | 2921038..2987103 | 66065 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14057.04 Da Isoelectric Point: 9.1510
>T172241 WP_000854690.1 NZ_CP061206:c2940965-2940588 [Escherichia coli]
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
Download Length: 378 bp
>T172241 NZ_CP079673:2663799-2664083 [Klebsiella pneumoniae subsp. pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTGTGCAGAATCCGCGAATTGAGTCGACCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTGTGCAGAATCCGCGAATTGAGTCGACCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13560.39 Da Isoelectric Point: 4.7830
>AT172241 WP_001305076.1 NZ_CP061206:c2941422-2941054 [Escherichia coli]
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHPDQAFPLLMKQPELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
Download Length: 369 bp
>AT172241 NZ_CP079673:2663567-2663809 [Klebsiella pneumoniae subsp. pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|