Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029782..2030053 | Replicon | chromosome |
| Accession | NZ_CP060963 | ||
| Organism | Escherichia coli strain EC7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029912..2030015 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029782..2030053 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9194_RS09950 | 2026337..2026999 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9194_RS09955 | 2027023..2027679 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9194_RS09960 | 2027781..2028011 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9194_RS09965 | 2028150..2028524 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9194_RS09970 | 2028528..2029400 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H9194_RS09975 | 2029413..2029754 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2029782..2030053 | - | 272 | - | - | Antitoxin |
| - | 2029912..2030015 | + | 104 | - | - | Toxin |
| H9194_RS09980 | 2030150..2030806 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H9194_RS09985 | 2030807..2030998 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H9194_RS09990 | 2031103..2031339 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9194_RS09995 | 2031457..2032896 | - | 1440 | WP_241462856.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171752 NZ_CP060963:2029912-2030015 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171752 NZ_CP060963:c2030053-2029782 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
