Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2337788..2338059 | Replicon | chromosome |
| Accession | NZ_CP060914 | ||
| Organism | Escherichia coli strain EC18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2337918..2338021 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2337788..2338059 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9203_RS11515 | 2334343..2335005 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9203_RS11520 | 2335029..2335685 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9203_RS11525 | 2335787..2336017 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9203_RS11530 | 2336156..2336530 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H9203_RS11535 | 2336534..2337406 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| H9203_RS11540 | 2337419..2337760 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2337788..2338059 | - | 272 | - | - | Antitoxin |
| - | 2337918..2338021 | + | 104 | - | - | Toxin |
| H9203_RS11545 | 2338156..2338812 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| H9203_RS11550 | 2338813..2339004 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H9203_RS11555 | 2339109..2339345 | - | 237 | WP_072649446.1 | YebV family protein | - |
| H9203_RS11560 | 2339463..2340902 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171472 NZ_CP060914:2337918-2338021 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171472 NZ_CP060914:c2338059-2337788 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
