Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2086086..2086357 | Replicon | chromosome |
| Accession | NZ_CP060709 | ||
| Organism | Escherichia coli strain ST18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2086124..2086227 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2086086..2086357 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9445_RS10505 | 2083243..2084682 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H9445_RS10510 | 2084800..2085036 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H9445_RS10515 | 2085141..2085332 | + | 192 | WP_000457842.1 | YebW family protein | - |
| H9445_RS10520 | 2085333..2085989 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2086086..2086357 | + | 272 | - | - | Antitoxin |
| - | 2086124..2086227 | - | 104 | - | - | Toxin |
| H9445_RS10525 | 2086385..2086726 | - | 342 | WP_000976476.1 | YebY family protein | - |
| H9445_RS10530 | 2086739..2087611 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H9445_RS10535 | 2087615..2087989 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9445_RS10540 | 2088128..2088358 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9445_RS10545 | 2088460..2089116 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H9445_RS10550 | 2089140..2089802 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170823 NZ_CP060709:c2086227-2086124 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT170823 NZ_CP060709:2086086-2086357 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
