Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2180383..2180528 | Replicon | chromosome |
| Accession | NZ_CP060678 | ||
| Organism | Salmonella enterica strain 190610_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2180423..2180526 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2180383..2180528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q82_RS10360 | 2176809..2177507 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| H9Q82_RS10365 | 2177531..2178187 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| H9Q82_RS10370 | 2178295..2178525 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| H9Q82_RS10375 | 2178663..2179037 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| H9Q82_RS10380 | 2179038..2179913 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| H9Q82_RS10385 | 2179930..2180283 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2180383..2180528 | - | 146 | - | - | Antitoxin |
| - | 2180423..2180526 | + | 104 | - | - | Toxin |
| H9Q82_RS10390 | 2180666..2181745 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| H9Q82_RS10395 | 2181720..2181998 | - | 279 | WP_001575998.1 | excisionase | - |
| H9Q82_RS10400 | 2182412..2184391 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| H9Q82_RS10405 | 2184710..2184808 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| H9Q82_RS10410 | 2185110..2185328 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 2158513..2234427 | 75914 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170715 NZ_CP060678:2180423-2180526 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170715 NZ_CP060678:c2180528-2180383 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
