Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1235054..1235199 | Replicon | chromosome |
| Accession | NZ_CP060670 | ||
| Organism | Salmonella enterica strain 190807_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1235094..1235197 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1235054..1235199 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q86_RS05885 | 1231480..1232178 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| H9Q86_RS05890 | 1232202..1232858 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| H9Q86_RS05895 | 1232966..1233196 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| H9Q86_RS05900 | 1233334..1233708 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| H9Q86_RS05905 | 1233709..1234584 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| H9Q86_RS05910 | 1234601..1234954 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 1235054..1235199 | - | 146 | - | - | Antitoxin |
| - | 1235094..1235197 | + | 104 | - | - | Toxin |
| H9Q86_RS05915 | 1235337..1236416 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| H9Q86_RS05920 | 1236391..1236669 | - | 279 | WP_001575998.1 | excisionase | - |
| H9Q86_RS05925 | 1237083..1239062 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| H9Q86_RS05930 | 1239381..1239479 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| H9Q86_RS05935 | 1239781..1239999 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 1215055..1276172 | 61117 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170597 NZ_CP060670:1235094-1235197 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170597 NZ_CP060670:c1235199-1235054 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
