Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3037576..3037721 | Replicon | chromosome |
| Accession | NZ_CP060668 | ||
| Organism | Salmonella enterica strain 190819_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3037578..3037681 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3037576..3037721 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q87_RS14895 | 3032776..3032994 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| H9Q87_RS14900 | 3033296..3033394 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| H9Q87_RS14905 | 3033713..3035692 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| H9Q87_RS14910 | 3036106..3036384 | + | 279 | WP_001575998.1 | excisionase | - |
| H9Q87_RS14915 | 3036359..3037438 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3037576..3037721 | + | 146 | - | - | Antitoxin |
| - | 3037578..3037681 | - | 104 | - | - | Toxin |
| H9Q87_RS14920 | 3037821..3038174 | - | 354 | WP_000722370.1 | YebY family protein | - |
| H9Q87_RS14925 | 3038191..3039066 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| H9Q87_RS14930 | 3039067..3039441 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| H9Q87_RS14935 | 3039579..3039809 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| H9Q87_RS14940 | 3039917..3040573 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| H9Q87_RS14945 | 3040597..3041295 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2983677..3059591 | 75914 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T170575 NZ_CP060668:c3037681-3037578 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT170575 NZ_CP060668:3037576-3037721 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
