Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3059712..3060228 Replicon chromosome
Accession NZ_CP060201
Organism Pseudomonas protegens strain H1F5C

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag GGI48_RS14140 Protein ID WP_103740982.1
Coordinates 3059712..3059993 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag GGI48_RS14145 Protein ID WP_103740990.1
Coordinates 3059983..3060228 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GGI48_RS14120 3055964..3056854 - 891 WP_179598832.1 HlyD family secretion protein -
GGI48_RS14125 3056851..3057060 - 210 WP_011058538.1 DUF1656 domain-containing protein -
GGI48_RS14130 3057057..3059144 - 2088 WP_179598834.1 FUSC family protein -
GGI48_RS14135 3059141..3059569 - 429 WP_016967883.1 winged helix DNA-binding protein -
GGI48_RS14140 3059712..3059993 - 282 WP_103740982.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
GGI48_RS14145 3059983..3060228 - 246 WP_103740990.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
GGI48_RS14150 3060293..3060538 - 246 WP_016967889.1 DUF2789 domain-containing protein -
GGI48_RS14155 3060553..3061014 - 462 WP_016967891.1 YbaK/EbsC family protein -
GGI48_RS14160 3061123..3062733 - 1611 WP_179598836.1 glycosyltransferase family 39 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-68)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10812.70 Da        Isoelectric Point: 10.2298

>T170099 WP_103740982.1 NZ_CP060201:c3059993-3059712 [Pseudomonas protegens]
MTYSLEFLPSAHKEWSKLGHTLREQFKKKLAERLEVPRIPADALHGLPDCYKIKLKASGYRLVYQVIEERVVVCVVAVGK
RERGTVYEQARKR

Download         Length: 282 bp

>T170099 NZ_CP077082:3856049-3856312 [Pseudomonas sp. OE 28.3]
GTGTCCAAAAATGAAAAGCTGCTCGCCAAACTGCTCAATGAGCACATGGCTTTTACCTGGCCTGAGCTGGTAACGCTGCT
GCACCAGCTCGGCTACAGACAGATTGAAGGGGCTGGAAGCCGCGTAAAATTCGATATCGGCAACCCCAGTGCAATGATCA
CCTTGCACAGGCCCCATCCCGGCAACGAACTGAAACACTACATTCGGCGCCAGATCATCGAACAATTGAAATCAGGAGAA
CTGATTCAGTGGACAACCAACTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8741.07 Da        Isoelectric Point: 4.5164

>AT170099 WP_103740990.1 NZ_CP060201:c3060228-3059983 [Pseudomonas protegens]
MQSILADKAVSVSELKKNPSAVLSAAQGGPVAVLNHNRVMGYMVPAEVFEALMERLDDLELAEIVRARSHETPVPVSLDD
L

Download         Length: 246 bp

>AT170099 NZ_CP077082:3856297-3856662 [Pseudomonas sp. OE 28.3]
GTGGACAACCAACTGAAACACCAAGGCTACATCGGCTCTATCGAAGCCAGCCTCGAAGACAACTGCCTGTTCGGCAAGGT
GCTGTTCATCAAGGCACTGGTGAGCTACGAAGGCAAAACCGTCGCCGAGCTGGACGCGGCGTTCCGTGAGGCCGTGGATG
ACTACCTCGTAACCTGCCAGGCGCTGGGGCAAACCCCGGAGAAACCTTGCAAGGGTTCATTCAACGTACGCGTCGGCCAC
GACCTGCATTTGGCGGCGGCCCTGGCGGCGACCCGCAAGAAAGTAACGCTCAATGACCTGACGCGGCAGGCGCTGAATGA
GTTTCTGCAACATCACTGCGTAGAACCACTCCCGGCGGTAGGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References