Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2230350..2230518 | Replicon | chromosome |
| Accession | NZ_CP060111 | ||
| Organism | Klebsiella michiganensis strain AKKL-001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230408..2230511 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2230350..2230518 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5403_RS10535 | 2225477..2227537 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| H5403_RS10540 | 2227544..2228203 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| H5403_RS10545 | 2228282..2228512 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| H5403_RS10550 | 2228648..2229022 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| H5403_RS10555 | 2229027..2229896 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| H5403_RS10560 | 2229913..2230251 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2230350..2230518 | - | 169 | - | - | Antitoxin |
| - | 2230408..2230511 | + | 104 | - | - | Toxin |
| H5403_RS10565 | 2230636..2231595 | - | 960 | WP_048261003.1 | spore coat U domain-containing protein | - |
| H5403_RS10570 | 2231610..2233940 | - | 2331 | WP_047723554.1 | fimbrial biogenesis outer membrane usher protein | - |
| H5403_RS10575 | 2233943..2234707 | - | 765 | WP_025106133.1 | molecular chaperone | - |
| H5403_RS10580 | 2234726..2235244 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169964 NZ_CP060111:2230408-2230511 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT169964 NZ_CP060111:c2230518-2230350 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
