Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018948..2019219 | Replicon | chromosome |
| Accession | NZ_CP060065 | ||
| Organism | Escherichia coli strain G5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019078..2019181 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018948..2019219 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4P49_RS09660 | 2015503..2016165 | - | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
| H4P49_RS09665 | 2016189..2016845 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H4P49_RS09670 | 2016947..2017177 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4P49_RS09675 | 2017316..2017690 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H4P49_RS09680 | 2017694..2018566 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H4P49_RS09685 | 2018579..2018920 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2018948..2019219 | - | 272 | - | - | Antitoxin |
| - | 2019078..2019181 | + | 104 | - | - | Toxin |
| H4P49_RS09690 | 2019316..2019972 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| H4P49_RS09695 | 2019973..2020164 | - | 192 | WP_001338167.1 | YebW family protein | - |
| H4P49_RS09700 | 2020269..2020505 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H4P49_RS09705 | 2020623..2022062 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T169841 NZ_CP060065:2019078-2019181 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT169841 NZ_CP060065:c2019219-2018948 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
