Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2924328..2924596 | Replicon | chromosome |
| Accession | NZ_CP059907 | ||
| Organism | Escherichia coli strain 181.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2924456..2924558 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2924328..2924596 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5C80_RS14135 | 2920881..2921543 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H5C80_RS14140 | 2921567..2922223 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| H5C80_RS14145 | 2922325..2922555 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| H5C80_RS14150 | 2922694..2923068 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H5C80_RS14155 | 2923072..2923944 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| H5C80_RS14160 | 2923957..2924298 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2924328..2924596 | - | 269 | - | - | Antitoxin |
| - | 2924456..2924558 | + | 103 | - | - | Toxin |
| H5C80_RS14165 | 2924693..2925349 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| H5C80_RS14170 | 2925350..2925541 | - | 192 | WP_001317886.1 | YebW family protein | - |
| H5C80_RS14175 | 2925646..2925882 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H5C80_RS14180 | 2926000..2927439 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T169347 NZ_CP059907:2924456-2924558 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT169347 NZ_CP059907:c2924596-2924328 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
